Fish-on-plate's repositories
u-track
Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting events resulting from occlusion or genuine aggregation and dissociation events
imagej-ncratio
ImageJ macro for calculation of nuclear to cytoplasmic ratio
msdanalyzer
A MATLAB class for Mean Square Displacement analysis.
OpenOpticalFlow
OpenOpticalFlow is an open source optical flow program in Matlab for extraction of high-resolution velocity fields from various flow visualization images.
RLOFLib
Robust Local Optical Flow (RLOF)
Sea
Anything
simpletracker
A simple particle tracking algorithm for MATLAB that can deal with gaps.
vmd_diffusion_coefficient
Computing Diffusion Coefficients in Macromolecular Simulations: The Diffusion Coefficient Tool for VMD