FedericoComoglio

Federico Comoglio's repositories

wavClusteR

An R/BioC package implementing a statistical and computational framework for the identification of RNA-protein interaction sites in PAR-CLIP data.

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meme2R

A parser from MEME XML output to R

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Rknots

An R package for the topological analysis of knotted 3D structures (with a focus on biological polymers)

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coursework

Selected courses in mathematics, statistics and data science I found particularly useful and well-structured.

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An R package for absolute quantification under uncertainty. dupiR implements a Bayesian approach using a binomial likelihood and non-conjugate, discrete uniform priors under sampling with or without replacement.

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awesome-github-profile-readme-templates

This repository contains best profile readme's for your reference.

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D-BSSE-SysBio-course

Scripts and presentation as introduction to R for the Systems Biology course, HS 2013, D-BSSE, ETH Zurich

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dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

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FedericoComoglio

Personal repo to add README.md to GitHub profile

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rSymPy

R Interface to SymPy Computer Algebra System

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federicocomoglio.github.io

Personal website

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Promoters_in_LADs

Code used in Leemans et al 2019: "Promoter-intrinsic and local chromatin features determine gene repression in LADs"

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transfer-learning-cnn

Transfer learning with pre-trained deep CNNs to predict cell mechanisms of action in response to drug perturbations. See Kensert et al. 2018 biorXiv

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