Beast code in Giters

Falko Hofmann's repositories

atac-seq-pipeline

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bash_scripts

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bioconda-recipes

Conda recipes for the bioconda channel.

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CIRI-cookbook

Document for CIRI-series software

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COMFI

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nf-TE-RNA-seq

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PEANuT

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cluster-brainspan

R script for some literature thesis

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hotspot

Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.

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idemux

Idemux is a command line tool designed to demultiplex paired-end fastq files from QuantSeq-Pool.

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Inferelator

The official Inferelator repository maintained by current or former Bonneau lab members

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intervaltree

A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

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meNOGG-excercise

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msCentipede

A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.

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NucleoATACR

R package for reading in & working with NucleoATAC outputs

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rna_seq_kallisto1

nextflow pipeline for single read rna-seq

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rsem-rna-seq-pipeline

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SH3BindingDomainFinder

tool for my masterthesis

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tfbs-analysis-utils

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transcription-factor-db-merger

https://gitlab.com/nodine-lab/transcription-factor-db-merger

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