FLIMinator's repositories
BioImageInformaticsWithFiji
7 sessions workshop about bioimage analysis
Mach3_dOPM_Manual
Manual for Mach3 Light-sheet Systems
AwesomeImager
Application for volumetric imaging using an Electrically tunable lens (ETL)
course
The Hugging Face course on Transformers
eo-learn
Earth observation processing framework for machine learning in Python
eo-learn-examples
Examples of Earth observation workflows that extract valuable information from satellite imagery, giving you hints and ideas how to use the EO data.
FigureOneLab
A running start for your computational biology portfolio.
HelloWorld
Source tree practice 1
napari-intro-tutorial-scipy2022
Materials for the "Interactive image analysis with napari " workshop presented at SciPy 2022
nd2
Full-featured nd2 (Nikon NIS Elements) file reader for python. With outputs to numpy, dask, and xarray
notebooks
Notebooks using the Hugging Face libraries 🤗
npy2bdv
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
plate_generator
Generate synthetic microtitre plate data with common HTS artefacts
platemate
Data analysis for 96 wells and multi-plate wells
test_wiki
testing wiki functionality
prml
Repository of notes, code and notebooks in Python for the book Pattern Recognition and Machine Learning by Christopher Bishop
pyimagej
Use ImageJ from Python
QPI-stitching-2D-3D
Preprocessing for 2D/3D stitching of phase images in Python, with some BigStitcher integration.
sentinelhub-py
Download and process satellite imagery in Python using Sentinel Hub services.