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FCP-INDI / C-PAC

Configurable Pipeline for the Analysis of Connectomes

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🐛 `Image Exception : #3 :: Attempted to multiply images/ROIs of different sizes`

shnizzedy opened this issue · comments

commented

Describe the bug

RuntimeError: Command:
fslmaths /outputs/working/pipeline_RBCv0/cpac_sub-NDARFP909LY1_ses-HBNsiteCBIC/_scan_rest_run-2_acq-ABCD/aw_jac/uni_masked_warp.nii.gz -mul /outputs/working/pipeline_RBC
v0/cpac_sub-NDARFP909LY1_ses-HBNsiteCBIC/_scan_rest_run-2_acq-ABCD/topup/topup_jac_01.nii.gz -seed 77742777 SBRef_dc_jac.nii.gz
Standard output:

Standard error:
Image Exception : #3 :: Attempted to multiply images/ROIs of different sizes
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted (core dumped)
Return code: 134

Preconfig

  • rbc-options

Expected behavior

uni_masked_warp.nii.gz and topup_jac_01.nii.gz have the same dimensions

Acceptance criteria

  • TOPUP runs without crashing

C-PAC version

v1.8.5

Additional context

$ fslinfo uni_masked_warp.nii.gz
data_type      FLOAT32
dim1           90
dim2           90
dim3           66
dim4           1
datatype       16
pixdim1        2.400000
pixdim2        2.400000
pixdim3        2.400000
pixdim4        0.000000
cal_max        0.0000
cal_min        0.0000
file_type      NIFTI-1+
$ fslinfo topup_jac_01.nii.gz
data_type      FLOAT32
dim1           90
dim2           90
dim3           60
dim4           1
datatype       16
pixdim1        2.400000
pixdim2        2.400000
pixdim3        2.399998
pixdim4        1.000000
cal_max        0.0000
cal_min        0.0000
file_type      NIFTI-1+
commented

The dimensions are different in the raw data?

$ fslinfo sub-NDARFP909LY1_ses-HBNsiteCBIC_acq-fMRI_dir-AP_epi.nii.gz 
data_type      INT16
dim1           90
dim2           90
dim3           60
dim4           1
datatype       4
pixdim1        2.400000
pixdim2        2.400000
pixdim3        2.399998
pixdim4        7.030000
cal_max        0.0000
cal_min        0.0000
file_type      NIFTI-1+
$ fslinfo sub-NDARFP909LY1_ses-HBNsiteCBIC_acq-fMRI_dir-PA_epi.nii.gz 
data_type      INT16
dim1           90
dim2           90
dim3           60
dim4           1
datatype       4
pixdim1        2.400000
pixdim2        2.400000
pixdim3        2.399998
pixdim4        7.030000
cal_max        0.0000
cal_min        0.0000
file_type      NIFTI-1+
$ fslinfo sub-NDARFP909LY1_ses-HBNsiteCBIC_task-rest_acq-ABCD_run-2_bold.nii.gz 
data_type      INT16
dim1           90
dim2           90
dim3           66
dim4           370
datatype       4
pixdim1        2.400000
pixdim2        2.400000
pixdim3        2.400000
pixdim4        0.800000
cal_max        0.0000
cal_min        0.0000
file_type      NIFTI-1+