🐛 ndmg pipeline stalls indefinitely in anat_skullstrip
e-kenneally opened this issue · comments
Describe the bug
When the ndmg preconfig is run on develop, it hangs at anat_skullstrip indefinitely or until it times out.
To reproduce
No response
Preconfig
- default
- abcd-options
- anat-only
- blank
- ccs-options
- fmriprep-options
- fx-options
- monkey
- monkey-ABCD
- ndmg
- nhp-macaque
- preproc
- rbc-options
- rodent
Custom pipeline configuration
No response
Run command
No response
Expected behavior
anat_skullstrip should take a while, but not 18 hours!
Acceptance criteria
- Figure out source for this and why it isn't happening in other pipelines
- ndmg preconfig runs start to finish in a reasonable amount of time
Screenshots
No response
C-PAC version
No response
Container platform
No response
Docker and/or Singularity version(s)
No response
Additional context
No response