Fadhl's repositories
Awesome_BigData_AI_DrugDiscovery
A collection of resources useful for leveraging big data and AI for drug discovery. It mainly serves as an orientation for new lab folks. It may be biased towards my lab interest.
cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
dashboards
[RETIRED] See Voilà as a supported replacement
metabridge_shiny
🕸 Network-based multi-omic integration of metabolomics data.
MicrobiomeAnalystR
A companion R package for the MicrobiomeAnalyst web server
Millennial
A minimalist Jekyll theme for running an online publication
scRNA_cell_deconv_benchmark
Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data
scRNAseq_Benchmark
Bench-marking classification tools for scRNA-seq data
scRNAseq_cell_cluster_labeling
Scripts to run and benchmark scRNA-seq cell cluster labeling methods
UMICH-CDS-SR-scRNA-seq-Workshop-2022
scRNA-seq analysis 2022 workshop hosted by UMICH's CDS-SR