F1000Research

tximport

Import and summarize transcript-level estimates for gene-level analysis

F1000Research.github.io

bioeconomic_MPA

Bioeconomic MPA network design - R toolkit

causaltrail

A tool for causal reasoning using the do-calculus

CyAnimator

Key frame animation app for Cytoscape

data-analysis-code

Created to publish data analysis code along with papers

Dataset-PTSD

docker-builds

A place to put docker build files

ecouter

These scripts convert an ECOUTER into a suitable data format for analysis

FlyOde

an online tool for interactive visualization of dynamic gene regulatory network in Drosophila eye development.

GEDDplot

GeneBreak

GeneBreak R package

GOsummaries

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Kibet-F1000Research

Supporting Documents and Data accompanying Kibet and Machanick (2015)

kvik

An interactive system for exploring the dynamics of carcinogenesis through integrated studies of biological pathways and genomic data.

MDRpred

Code to predict multi-drug resistance transporters.

MetaGenSense

A web application framework for analysis and visualization of High throughput Sequencing metagenomic data

MPC

Modular Program Constructor (MPC) is a semi-automated model constructor designed to work with JSim's Mathematical Modeling Language (MML). MPC is a pre-compiler written in Java.

MTOpublic

Public repository for MTO reanalysis by Norris & Wilson

Network-Randomizer

paraat

paraat2.0 code and files for creation of dockerfile

PSFC

regionReport

Generate HTML report for a set of genomic regions or DESeq2/edgeR results

SLiMScape

Cytoscape plugin for discovery and analysis of Short Linear Motifs

SocialNetworkApp

swisspalm

S-palmitoylation database

WebApplication

Source for Web Server Installation

YEATSCODE

YEATSCODE2