Erwan67

ImageJ_Export-LIF-as-Individual-Images

ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)

Analyse-Neuron-and-mitochondria

cellpose-napari

napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

clij

GPU-accelerated image processing for everyone

Configurations

Configurations for Marlin Firmware

count-phase-contrats-cells

Creation-of-a-rotatable-grid-in-FIJI

the code allows you to draw a rectangle (with rotation) on an area defined by the user. This zone is cropped then divided into number of sectors defined by the user

Dancing-Cells

follow 2 cells in time and calculate the angle of displacement between each time

deepcell-tf

Deep Learning Library for Single Cell Analysis

Macro-_Scripting_Workshop

Macro-FIJI-count-mesure-in-the-well-of-24-well-plate

mathematical_morphology_with_MorphoLibJ

A collection of demonstration materials for MorphoLibJ.

napari-omero

NEUBIAS-Porto2019

Hands-on Python: Plotting and Data Analysis

neubias_academy_biapy

NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter

neubias_academy_stardist

NEUBIAS_AnalystSchool2020

OAD

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools.

Open-.czi-serie-with-Bio-Format-and-correct-the-illumination-with-FFT

After acquisition in bright background of multiple tiles, there are field homogeneity problems, this prevents correct segmentation and in addition it is not pretty! we perform shading correction via FFT

OpenCV-Python-Series

An OpenCV & Python Tutorial Series and Reference.

OpenDialog-python

To use windows for select your ImageFolder

processing_imagej

Python

All Algorithms implemented in Python

Python-for-Bioimage-Analysis

This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biological imaging.

QCANet

Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development

QuickFigures

QuickFigures is a toolset for creating scientific figures see publication for details

ypipe

Hardware device (STM32duino based) for spying on RS232 communications

ZEISS-Macro-split-stitch-and-save

ZeroCostDL4Mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

ZstackDepthColorCode

Z-stack Depth Colorcode ImageJ FIJI plugin