Erika 's repositories
EDA_GenomeAnalysis
23andme and Myheritage genoma analysis
atlas_protocol
A computational protocol for atlas-level data integration and analysis as performed in Salcher et al. (2022).
differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
ena-upload-cli
ENA upload tool - script your Open Data upload to the European Nucleotide Archive
GitWorkshop
Following TheBridge Git workshop & terminal commands use
Machine-Learning-Classification
The work of my Msc thesis. Developing a Machine Learning Model for classification of Customer Support Request at Ericsson
ML_Drug_Discovery
PROYECTO DE BIOINFORMÁTICA – DESARROLLO COMPUTACIONAL DE FÁRMACOS
Monkey-Pox-STR
Moneky Pox STR clustering
nextflow_workflow_tutorial
Creating a NextFlow workflow from Andrew Severin tutorial
nf-deseq2
A RNA-seq differential expression analysis pipeline downstream of nf-core/rnaseq.
python
Jupyter notebooks and datasets for the interesting pandas/python/data science video series.
relecov-platform
Clone repository for hackathon
relecov_biohackaton
Documentation on the progress from group 2
Shell_Intro_for_Bioinformatics_STG
Intro to Shell for Bioinformatics - with STG examples
single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
useful_functions
Repetitive code and useful functions to have on hand.
viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples