Eric Thomson's repositories
tfrecord-view
Consume and view contents of TFRecord files (for Tensorflow's object detection api)
CCN_caiman_mesmerize_workshop_2023
Repo for CCN workshop on caiman and mesmerize in January 2023
practical_python
Learn just enough Python to start analyzing and visualizing data.
covid-mapping
Using Python to visualize coronavirus data
gigadetector
Object detection pipeline for images much too large to fit in GPU
movie-crop
Crop movies using Python
vp_retrain
Notebook to retrain volpy mask-rcnn using torch
animatplot
A python package for animating plots build on matplotlib.
ccn-template
Template repository for CCN software projects
d2l-en
Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.
DeepLabCut
Markerless pose estimation of user-defined features with deep learning for all animals, including humans
dj-filepaths-example
Simple example of how to use filepaths in datajoint
earlybird
To-do tree application.
ezsaver
Save and load variables in Python quickly, without thinking about it too much
fastplotlib
Next-gen fast plotting library running on WGPU using the pygfx rendering engine
image_sandbox
Images to use in colab notebooks temporarily
mandelviews
View mandelbrot sets, example repo implementing guidelines at CCN template
MESmerize
Platform for Calcium Imaging analysis
mesmerize-core
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
mesmerize_setup
Getting started with Mesmerize on Windows.
netpyne
A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.
nwb_hackathons
Repository for collecting materials from nwb hackathons
OpenDS4All
OpenDS4All project, hosted by LF AI & Data
simple_track
Using Point Grey with Spinnaker API
umap
Uniform Manifold Approximation and Projection