Epistasis Lab at Cedars Sinai

tpot

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

pmlb

PMLB: A large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms.

KRAGEN

Software to implement GoT with a weviate vectorized database

scikit-rebate

A scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning.

Aliro

Aliro: AI-Driven Data Science

tpot2

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

scikit-mdr

A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.

digen

Diverse and generative ML benchmarks

pmlbr

pmlb is an R interface to the Penn Machine Learning Benchmarks data repository

autoqtl

Automated Quantitative Trait Locus Analysis (AutoQTL)

EBIC.jl

EBIC - a biclustering algorithm in Julia

AlzKB

SAFE

The SAFE Algorithm: Solution and Fitness Evolution

DTox

A knowledge-guided deep learning model for prediction and interpretation of drug toxicity

GPT4_and_Review

Using GPT-4 to write a scientific review article: a pilot evaluation study

epistasis_detection

Implementation of an efficient algorithm to compute linear regression models for epistasis that permit varied genetic encodings (penetrance functions) of the interactions of loci and provide statistical evidence for epistasis.

latent_phenotype_project

PAGER

tpot2_imputetest

Testing complex imputation methods on a Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

TTox

Develop and evaluate a feature selection pipeline for the identification of toxicity targets

aliro-imager

aliroed-pi-gen

Tool used to create the AliroEd Raspberry Pi OS images

alzkb-site

exploration-trie-tpot

Comparison of evolutionary algorithms within TPOT using a trie to determine their exploratory nature

PSB2024_spine

STAR_outliers

STAR_outliers_figure_and_table_generation

tpot2-feedstock

A conda-smithy repository for tpot2.

tpot2-test

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

tpot2_gptp_experiments