Epistasis Lab at Cedars Sinai's repositories
scikit-rebate
A scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning.
scikit-mdr
A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.
epistasis_detection
Implementation of an efficient algorithm to compute linear regression models for epistasis that permit varied genetic encodings (penetrance functions) of the interactions of loci and provide statistical evidence for epistasis.
GPT4_and_Review
Using GPT-4 to write a scientific review article: a pilot evaluation study
tpot2_imputetest
Testing complex imputation methods on a Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
SynTwin
SynTwin: A graph-based approach for predicting clinical outcomes using digital twins derived from synthetic patients
aliroed-pi-gen
Tool used to create the AliroEd Raspberry Pi OS images
exploration-trie-tpot
Comparison of evolutionary algorithms within TPOT using a trie to determine their exploratory nature
tpot2-feedstock
A conda-smithy repository for tpot2.
tpot2-test
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.