Ensembl Genomes's repositories
ensemblgenomes-api
Auxillary API for accessing Ensembl Genomes databases using the Ensembl Perl API
eg-web-common
modules/files required to set up any of the EG genome browsers
arrayexpress-cram-submission
A python pipeline for submitting CRAM files generated by ArrayExpress to the European Nucleotide Archive (ENA)
eg-web-plants
modules required to set up EG Plants mirror
eg-web-fungi
modules required to set up EG Fungi mirror
eg-web-parasite
Modules required to set up a WormBase ParaSite genome browser
eg-web-protists
modules required to set up EG Protists mirror
parasite-rest
Endpoints and documentation specific to the WormBase ParaSite REST service
eg-biomart-perl
Ensembl Genomes specific fork of BioMart martview. Contains modifications to support Ensembl Genomes databases.
eg-web-bacteria
modules required to set up EG Bacteria mirror
eg-web-metazoa
modules required to set up EG Metazoa mirror
eg-web-search
Modules required for an EG mirror to use eb-eye search service
eg-web-testsuite
Test suite for Ensembl Genomes websites
parasite-docs
Repository to store static documentation content for WormBase ParaSite (separate to main eg-web-parasite repo)
parasite-static
Keeping static contents for ParaSite website
personal-dbolser
Scripts and other junk from dbolser
wbps-biomart-perl
MartView with specific customisations for WormBase ParaSite
ebi_plant_index
Parse EBI plant samples and represent them in json for federated search
eg-web-g1k
Repository for files required to set up 1000genomes mirror of Ensembl
eg-web-vectorbase
modules required to set up a VectorBase genome browser
ensembl-analysis
Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
ensembl-static
Stores all static contents for Non-vertebrates divisions and species.
phytopathdb-static
Static HTML version of phytopathdb.org
transplantdb-static
Static HTML version of transplantdb.eu
vectorbase-rest
VectorBase REST interface plugins