Zhonghua Xia's starred repositories

machine-learning-articles

🧠💬 Articles I wrote about machine learning, archived from MachineCurve.com.

chemprop

Message Passing Neural Networks for Molecule Property Prediction

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torchdrug

A powerful and flexible machine learning platform for drug discovery

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TDC

Therapeutics Commons: Artificial Intelligence Foundation for Therapeutic Science

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practical_cheminformatics_tutorials

Practical Cheminformatics Tutorials

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AutoDock-Vina

AutoDock Vina

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aizynthfinder

A tool for retrosynthetic planning

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ord-data

Official data repository for the Open Reaction Database

mmpdb

A package to identify matched molecular pairs and use them to predict property changes.

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DrugEx

Deep learning toolkit for Drug Design with Pareto-based Multi-Objective optimization in Polypharmacology

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rdchiral

Wrapper for RDKit's RunReactants to improve stereochemistry handling

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ord-schema

Schema for the Open Reaction Database

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community

DeepModeling community content

SailVina

SailVina重构增强版

PyAutoFEP

PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods

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Synt-On

Open-source tool for synthons-based library design.

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AMDock-win

(Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina

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practical_cheminformatics_posts

Practical Cheminformatics Blog Posts

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RSC_OpenScience_Standardization_202104

Materials for my presentation on molecular standardization as part of the RSC OpenScience workshop series

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Reaction_Data_Cleaning

Chemical reaction data cleaning

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ADMET_XGBoost

Accurate ADMET Prediction with XGBoost

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rdkit-orig

Older clone of the RDKit subversion repository at http://sourceforge.net/projects/rdkit/

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aizynthtrain

Tools to train synthesis prediction models

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parametric_tsne_pytorch

Implementation of regular and multiscale parametric t-SNE in pytorch

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RDTool

Optimized version of the Reaction Decoder Tool (RDTool)

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DeepSCAMs

flagging SCAMs

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