Emergent Epidemics Lab

H5N1_US2024_timeline

Data associated with the timeline of events during the 2024 H5N1 outbreak in the United States

covid19_npi_china

Code for: The effect of human mobility and control measures on the COVID-19 epidemic in China

infectious_disease_predictability

Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri

Emergent_Epidemics_Lab_nCoV2019

An RShiny App for mapping nCoV2019 line list data

Puerto_Rico_Arbovirus_Data

Arbovirus and dengue data from Puerto Rico

beyond_R0

Code and data for final epidemic size calculations

COVID_crowding

Crowding and the shape of COVID-19 epidemics

Ebola_SitReps_Uganda_2022

Digitizing Ebola SitReps from Uganda

US_influenza_data_1998_09-2019

Data on US ILI, influenza pos lab tests, and total influenza cases from 1998-2019

COVID_Hong_Kong

COVID data analysis from Hong Kong

eeid_mobility

Analysis of Baidu mobility data for EEID

ma_covid

MA Dept. of Public Health data on COVID19

ca_covid

California COVID data

COVID_Mexico

Analyses of COVID-19 data from Mexico

influenza_surveillance_bias_texas

Code and data for, "Socioeconomic bias in influenza surveillance"

MA_COVID_wastewater

Plotting wastewater surveillance data for SARS-CoV-2 in MA

NNDS_CDC_pneumococcal

US state-level data from the CDC on invasive pneumococcal disease

pathogen_containment

Analysis of outbreak extinction probabilities

statcomp

USDA_cattle_data

VON_NICU_2018

Code for The Interhospital Transfer Network for Very Low Birth Weight Infants in the United States

wastewater_scan_analysis

Analysis of wastewater scan pathogen surveillance data