Embedding / UER-py

Open Source Pre-training Model Framework in PyTorch & Pre-trained Model Zoo

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UER-py

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Pre-training has become an essential part for NLP tasks and has led to remarkable improvements. UER-py (Universal Encoder Representations) is a toolkit for pre-training on general-domain corpus and fine-tuning on downstream task. UER-py maintains model modularity and supports research extensibility. It facilitates the use of different pre-training models (e.g. BERT, GPT, ELMO), and provides interfaces for users to further extend upon. With UER-py, we build a model zoo which contains pre-trained models based on different corpora, encoders, and targets.


Recently we received [Chinese 36-layers RoBERTa](https://share.weiyun.com/J9rj9WRB) and [Chinese 36-layers RoBERTa-WWM](https://share.weiyun.com/UsI0OSeR) models pre-trained with Tencent Cloud TI-ONE (see models/bert_xlarge_config.json for detailed configuration). We were told that the 36-layers RoBERTa achieves improvements on some downstream tasks such as XNLI and CMRC2018 and models with more corpora and training steps will be released in the near future. We look forward to user feedback on this model.

Table of Contents


Features

UER-py has the following features:

  • Reproducibility. UER-py has been tested on many datasets and should match the performances of the original pre-training model implementations.
  • Multi-GPU. UER-py supports CPU mode, single GPU mode, and distributed training mode.
  • Model modularity. UER-py is divided into multiple components: embedding, encoder, target, and downstream task fine-tuning. Ample modules are implemented in each component. Clear and robust interface allows users to combine modules with as few restrictions as possible.
  • Efficiency. UER-py refines its pre-processing, pre-training, and fine-tuning stages, which largely improves speed and needs less memory.
  • Model zoo. With the help of UER-py, we pre-trained models with different corpora, encoders, and targets. Proper selection of pre-trained models is important to the downstream task performances.
  • SOTA results. UER-py supports comprehensive downstream tasks (e.g. classification and machine reading comprehension) and has been used in winning solutions of many NLP competitions.

Requirements

  • Python 3.6
  • torch >= 1.0
  • six >= 1.12.0
  • argparse
  • packaging
  • For the mixed precision training you will need apex from NVIDIA
  • For the pre-trained model conversion (related with TensorFlow) you will need TensorFlow
  • For the tokenization with sentencepiece model you will need SentencePiece
  • For developing a stacking model you will need LightGBM and BayesianOptimization

Quickstart

We use BERT model and Douban book review classification dataset to demonstrate how to use UER-py. We firstly pre-train model on book review corpus and then fine-tune it on classification dataset. There are three input files: book review corpus, book review classification dataset, and vocabulary. All files are encoded in UTF-8 and are included in this project.

The format of the corpus for BERT is as follows:

doc1-sent1
doc1-sent2
doc1-sent3

doc2-sent1

doc3-sent1
doc3-sent2

The book review corpus is obtained by book review classification dataset. We remove labels and split a review into two parts from the middle (See book_review_bert.txt in corpora folder).

The format of the classification dataset is as follows:

label    text_a
1        instance1
0        instance2
1        instance3

Label and instance are separated by \t . The first row is a list of column names. The label ID should be an integer between (and including) 0 and n-1 for n-way classification.

We use Google's Chinese vocabulary file, which contains 21128 Chinese characters. The format of the vocabulary is as follows:

word-1
word-2
...
word-n

First of all, we preprocess the book review corpus. We need to specify the model's target in pre-processing stage (--target):

python3 preprocess.py --corpus_path corpora/book_review_bert.txt --vocab_path models/google_zh_vocab.txt --dataset_path dataset.pt \
                      --processes_num 8 --target bert

Notice that six>=1.12.0 is required.

Pre-processing is time-consuming. Using multiple processes can largely accelerate the pre-processing speed (--processes_num). After pre-processing, the raw text is converted to dataset.pt, which is the input of pretrain.py. Then we download Google's pre-trained Chinese model google_zh_model.bin, and put it in models folder. We load Google's pre-trained Chinese model and train it on book review corpus. We should explicitly specify model's encoder (--encoder) and target (--target). Suppose we have a machine with 8 GPUs.:

python3 pretrain.py --dataset_path dataset.pt --vocab_path models/google_zh_vocab.txt --pretrained_model_path models/google_zh_model.bin \
                    --output_model_path models/book_review_model.bin  --world_size 8 --gpu_ranks 0 1 2 3 4 5 6 7 \
                    --total_steps 5000 --save_checkpoint_steps 1000 --encoder bert --target bert

mv models/book_review_model.bin-5000 models/book_review_model.bin

Notice that the model trained by pretrain.py is attacted with the suffix which records the training step. We could remove the suffix for ease of use.

Then we fine-tune pre-trained models on downstream classification dataset. We can use google_zh_model.bin:

python3 run_classifier.py --pretrained_model_path models/google_zh_model.bin --vocab_path models/google_zh_vocab.txt \
                          --train_path datasets/douban_book_review/train.tsv --dev_path datasets/douban_book_review/dev.tsv --test_path datasets/douban_book_review/test.tsv \
                          --epochs_num 3 --batch_size 32 --encoder bert

or use our book_review_model.bin, which is the output of pretrain.py

python3 run_classifier.py --pretrained_model_path models/book_review_model.bin --vocab_path models/google_zh_vocab.txt \
                          --train_path datasets/douban_book_review/train.tsv --dev_path datasets/douban_book_review/dev.tsv --test_path datasets/douban_book_review/test.tsv \
                          --epochs_num 3 --batch_size 32 --encoder bert

It turns out that the result of Google's model is 87.5; The result of book_review_model.bin is 88.2. It is also noticeable that we don't need to specify the target in fine-tuning stage. Pre-training target is replaced with task-specific target.

The default path of the fine-tuned classifier model is ./models/classifier_model.bin . Then we do inference with the classifier model.

python3 inference/run_classifier_infer.py --load_model_path models/classifier_model.bin --vocab_path models/google_zh_vocab.txt \
                                          --test_path datasets/douban_book_review/test_nolabel.tsv \
                                          --prediction_path datasets/douban_book_review/prediction.tsv --labels_num 2 --encoder bert

--test_path specifies the path of the file to be predicted.
--prediction_path specifies the path of the file with prediction results.
We need to explicitly specify the number of labels by --labels_num. Douban book review is a two-way classification dataset.

We recommend to use CUDA_VISIBLE_DEVICES to specify which GPUs are visible (all GPUs are used in default) :

CUDA_VISIBLE_DEVICES=0 python3 run_classifier.py --pretrained_model_path models/book_review_model.bin --vocab_path models/google_zh_vocab.txt \
                                                 --train_path datasets/douban_book_review/train.tsv --dev_path datasets/douban_book_review/dev.tsv --test_path datasets/douban_book_review/test.tsv \
                                                 --epochs_num 3 --batch_size 32 --encoder bert

CUDA_VISIBLE_DEVICES=0 python3 inference/run_classifier_infer.py --load_model_path models/classifier_model.bin --vocab_path models/google_zh_vocab.txt \
                                                                 --test_path datasets/douban_book_review/test_nolabel.tsv \
                                                                 --prediction_path datasets/douban_book_review/prediction.tsv --labels_num 2 --encoder bert

BERT consists of next sentence prediction (NSP) target. However, NSP target is not suitable for sentence-level reviews since we have to split a sentence into multiple parts. UER-py facilitates the use of different targets. Using masked language modeling (MLM) as target could be a properer choice for pre-training of reviews:

python3 preprocess.py --corpus_path corpora/book_review.txt --vocab_path models/google_zh_vocab.txt --dataset_path dataset.pt \
                      --processes_num 8 --target mlm

python3 pretrain.py --dataset_path dataset.pt --vocab_path models/google_zh_vocab.txt --pretrained_model_path models/google_zh_model.bin \
                    --output_model_path models/book_review_mlm_model.bin  --world_size 8 --gpu_ranks 0 1 2 3 4 5 6 7 \
                    --total_steps 5000 --save_checkpoint_steps 2500 --batch_size 64 --encoder bert --target mlm

mv models/book_review_mlm_model.bin-5000 models/book_review_mlm_model.bin

CUDA_VISIBLE_DEVICES=0,1 python3 run_classifier.py --pretrained_model_path models/book_review_mlm_model.bin --vocab_path models/google_zh_vocab.txt \
                                                   --train_path datasets/douban_book_review/train.tsv --dev_path datasets/douban_book_review/dev.tsv --test_path datasets/douban_book_review/test.tsv \
                                                   --epochs_num 3 --batch_size 64 --encoder bert

The actual batch size of pre-training is --batch_size times --world_size .
It turns out that the result of book_review_mlm_model.bin is around 88.5.

BERT is slow. It could be great if we can speed up the model and still achieve competitive performance. To achieve this goal, we select a 2-layers LSTM encoder to substitute 12-layers Transformer encoder. We firstly download reviews_lstm_lm_model.bin for 2-layers LSTM encoder. Then we fine-tune it on downstream classification dataset:

python3 run_classifier.py --pretrained_model_path models/reviews_lstm_lm_model.bin --vocab_path models/google_zh_vocab.txt --config_path models/rnn_config.json \
                          --train_path datasets/douban_book_review/train.tsv --dev_path datasets/douban_book_review/dev.tsv --test_path datasets/douban_book_review/test.tsv \
                          --epochs_num 5  --batch_size 64 --learning_rate 1e-3 --embedding word --encoder lstm --pooling mean

python3 inference/run_classifier_infer.py --load_model_path models/classifier_model.bin --vocab_path models/google_zh_vocab.txt \
                                          --config_path models/rnn_config.json --test_path datasets/douban_book_review/test_nolabel.tsv \
                                          --prediction_path datasets/douban_book_review/prediction.tsv \
                                          --labels_num 2 --embedding word --encoder lstm --pooling mean

We can achieve over 85.4 accuracy on testset, which is a competitive result. Using the same LSTM encoder without pre-training can only achieve around 81 accuracy.

UER-py also provides many other encoders and corresponding pre-trained models.
The example of pre-training and fine-tuning ELMo on Chnsenticorp dataset:

python3 preprocess.py --corpus_path corpora/chnsenticorp.txt --vocab_path models/google_zh_vocab.txt --dataset_path dataset.pt \
                      --processes_num 8 --seq_length 192 --target bilm

python3 pretrain.py --dataset_path dataset.pt --vocab_path models/google_zh_vocab.txt --pretrained_model_path models/mixed_corpus_elmo_model.bin \
                    --config_path models/birnn_config.json \
                    --output_model_path models/chnsenticorp_elmo_model.bin --world_size 8 --gpu_ranks 0 1 2 3 4 5 6 7 \
                    --total_steps 5000 --save_checkpoint_steps 2500 --batch_size 64 --learning_rate 5e-4 \
                    --embedding word --encoder bilstm --target bilm

mv models/chnsenticorp_elmo_model.bin-5000 models/chnsenticorp_elmo_model.bin

python3 run_classifier.py --pretrained_model_path models/chnsenticorp_elmo_model.bin --vocab_path models/google_zh_vocab.txt --config_path models/birnn_config.json \
                          --train_path datasets/chnsenticorp/train.tsv --dev_path datasets/chnsenticorp/dev.tsv --test_path datasets/chnsenticorp/test.tsv \
                          --epochs_num 5  --batch_size 64 --seq_length 192 --learning_rate 5e-4 \
                          --embedding word --encoder bilstm --pooling mean

Users can download mixed_corpus_elmo_model.bin from here.

The example of fine-tuning GatedCNN on Chnsenticorp dataset:

python3 run_classifier.py --pretrained_model_path models/wikizh_gatedcnn_lm_model.bin \
                          --vocab_path models/google_zh_vocab.txt \
                          --config_path models/gatedcnn_9_config.json \
                          --train_path datasets/chnsenticorp/train.tsv --dev_path datasets/chnsenticorp/dev.tsv --test_path datasets/chnsenticorp/test.tsv \
                          --epochs_num 5  --batch_size 64 --learning_rate 5e-5 \
                          --embedding word --encoder gatedcnn --pooling max

python3 inference/run_classifier_infer.py --load_model_path models/classifier_model.bin --vocab_path models/google_zh_vocab.txt \
                                          --config_path models/gatedcnn_9_config.json \
                                          --test_path datasets/chnsenticorp/test_nolabel.tsv \
                                          --prediction_path datasets/chnsenticorp/prediction.tsv \
                                          --labels_num 2 --embedding word --encoder gatedcnn --pooling max

Users can download wikizh_gatedcnn_lm_model.bin from here.

UER-py supports cross validation for classification. The example of using cross validation on SMP2020-EWECT, a competition dataset:

CUDA_VISIBLE_DEVICES=0 python3 run_classifier_cv.py --pretrained_model_path models/google_zh_model.bin \
                                                    --vocab_path models/google_zh_vocab.txt \
                                                    --config_path models/bert_base_config.json \
                                                    --output_model_path models/classifier_model.bin \
                                                    --train_features_path datasets/smp2020-ewect/virus/train_features.npy \
                                                    --train_path datasets/smp2020-ewect/virus/train.tsv \
                                                    --epochs_num 3 --batch_size 32 --folds_num 5 --encoder bert

The results of google_zh_model.bin are 79.1/63.8 (Accuracy/Marco F1).
--folds_num specifies the number of rounds of cross-validation.
--output_path specifies the path of the fine-tuned model. --folds_num models are saved and the fold ID suffix is added to the model's name.
--train_features_path specifies the path of out-of-fold (OOF) predictions. run_classifier_cv.py generates probabilities over classes on each fold by training a model on the other folds in the dataset. train_features.npy can be used as features for stacking. More details are introduced in Competition solutions section.

We can further try different pre-trained models. For example, we download RoBERTa-wwm-ext-large from HIT and convert it into UER's format:

python3 scripts/convert_bert_from_huggingface_to_uer.py --input_model_path models/chinese_roberta_wwm_large_ext_pytorch/pytorch_model.bin \
                                                        --output_model_path models/chinese_roberta_wwm_large_ext_pytorch/pytorch_model_uer.bin \
                                                        --layers_num 24

CUDA_VISIBLE_DEVICES=0,1 python3 run_classifier_cv.py --pretrained_model_path models/chinese_roberta_wwm_large_ext_pytorch/pytorch_model_uer.bin \
                                                      --vocab_path models/google_zh_vocab.txt \
                                                      --config_path models/bert_large_config.json \
                                                      --train_path datasets/smp2020-ewect/virus/train.tsv \
                                                      --train_features_path datasets/smp2020-ewect/virus/train_features.npy \
                                                      --epochs_num 3 --batch_size 64 --folds_num 5 --encoder bert

The results of RoBERTa-wwm-ext-large are 80.3/66.8 (Accuracy/Marco F1).
The example of using our pre-trained model Reviews+BertEncoder(large)+MlmTarget (see model zoo for more details):

CUDA_VISIBLE_DEVICES=0,1 python3 run_classifier_cv.py --pretrained_model_path models/reviews_bert_large_mlm_model.bin \
                                                      --vocab_path models/google_zh_vocab.txt \
                                                      --config_path models/bert_large_config.json \
                                                      --train_path datasets/smp2020-ewect/virus/train.tsv \
                                                      --train_features_path datasets/smp2020-ewect/virus/train_features.npy \
                                                      --folds_num 5 --epochs_num 3 --batch_size 64 --seed 17 --encoder bert

The results are 81.3/68.4 (Accuracy/Marco F1), which has very competitive advantage compared with other open-source pre-trained weights.
Sometimes large model does not converge. We need to try different random seeds by specifying --seed.

Besides classification, UER-py also provides scripts for other downstream tasks. We could use run_ner.py for named entity recognition:

python3 run_ner.py --pretrained_model_path models/google_zh_model.bin --vocab_path models/google_zh_vocab.txt \
                   --train_path datasets/msra_ner/train.tsv --dev_path datasets/msra_ner/dev.tsv --test_path datasets/msra_ner/test.tsv \
                   --label2id_path datasets/msra_ner/label2id.json --epochs_num 5 --batch_size 16 --encoder bert

--label2id_path specifies the path of label2id file for named entity recognition. The default path of the fine-tuned ner model is ./models/ner_model.bin . Then we do inference with the ner model:

python3 inference/run_ner_infer.py --load_model_path models/ner_model.bin --vocab_path models/google_zh_vocab.txt \
                                   --test_path datasets/msra_ner/test_nolabel.tsv \
                                   --prediction_path datasets/msra_ner/prediction.tsv \
                                   --label2id_path datasets/msra_ner/label2id.json --encoder bert

We could use run_cmrc.py for machine reading comprehension:

python3 run_cmrc.py --pretrained_model_path models/google_zh_model.bin --vocab_path models/google_zh_vocab.txt \
                    --train_path datasets/cmrc2018/train.json --dev_path datasets/cmrc2018/dev.json \
                    --epochs_num 2 --batch_size 8 --seq_length 512 --encoder bert

We don't specify the --test_path because CMRC2018 dataset doesn't provide labels for testset. Then we do inference with the cmrc model:

python3 inference/run_cmrc_infer.py --load_model_path models/cmrc_model.bin --vocab_path models/google_zh_vocab.txt \
                                    --test_path datasets/cmrc2018/test.json  \
                                    --prediction_path datasets/cmrc2018/prediction.json --seq_length 512 --encoder bert

Datasets

We collected a range of downstream datasets and converted them into format that UER can load directly.


Modelzoo

With the help of UER, we pre-trained models with different corpora, encoders, and targets. All pre-trained models can be loaded by UER directly. More pre-trained models will be released in the future. Detailed introduction of pre-trained models and download links can be found in modelzoo.


Instructions

UER-py's framework

UER-py is organized as follows:

UER-py/
    |--uer/
    |    |--encoders/: contains encoders such as RNN, CNN, Attention, CNN-RNN, BERT
    |    |--targets/: contains targets such as language modeling, masked language modeling, sentence prediction
    |    |--layers/: contains frequently-used NN layers, such as embedding layer, normalization layer
    |    |--models/: contains model.py, which combines embedding, encoder, and target modules
    |    |--utils/: contains frequently-used utilities
    |    |--model_builder.py
    |    |--model_loader.py
    |    |--model_saver.py
    |    |--trainer.py
    |
    |--corpora/: contains corpora for pre-training
    |--datasets/: contains downstream tasks
    |--models/: contains pre-trained models, vocabularies, and configuration files
    |--scripts/: contains useful scripts for pre-training models
    |--inference/:contains inference scripts for downstream tasks
    |
    |--preprocess.py
    |--pretrain.py
    |--run_classifier.py
    |--run_classifier_cv.py
    |--run_mt_classifier.py
    |--run_cmrc.py
    |--run_ner.py
    |--run_dbqa.py
    |--run_c3.py
    |--README.md

The code is well-organized. Users can use and extend upon it with little efforts.

More examples of using UER can be found in instructions, which help users quickly implement pre-training models such as BERT, GPT, ELMO and fine-tune pre-trained models on a range of downstream tasks.


Competition solutions

UER-py has been used in winning solutions of many NLP competitions. In this section, we provide some examples of using UER-py to achieve SOTA results on NLP competitions, such as CLUE. See competition solutions for more detailed information.


Experiments

We conducted a variety of experiments to test UER's performace. See experiments for more experimental results.


Citation

We have a paper one can cite for UER-py:

@article{zhao2019uer,
  title={UER: An Open-Source Toolkit for Pre-training Models},
  author={Zhao, Zhe and Chen, Hui and Zhang, Jinbin and Zhao, Xin and Liu, Tao and Lu, Wei and Chen, Xi and Deng, Haotang and Ju, Qi and Du, Xiaoyong},
  journal={EMNLP-IJCNLP 2019},
  pages={241},
  year={2019}
}

Contact information

For communication related to this project, please contact Zhe Zhao (helloworld@ruc.edu.cn; nlpzhezhao@tencent.com) or Yudong Li (liyudong123@hotmail.com) or Xin Zhao (zhaoxinruc@ruc.edu.cn).

This work is instructed by my enterprise mentors Qi Ju, Xuefeng Yang, Haotang Deng and school mentors Tao Liu, Xiaoyong Du.

I also got a lot of help from my Tencent colleagues Hui Chen, Jinbin Zhang, Zhiruo Wang, Weijie Liu, Peng Zhou, Haixiao Liu, and Weijian Wu.

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Open Source Pre-training Model Framework in PyTorch & Pre-trained Model Zoo


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