Francesco Padovani's repositories
anndata
Annotated data.
cellpose_omni
a generalist algorithm for cellular segmentation
ChromRings
Python package to quantify chromatin reorganizaiton in C. Elegans upon starvation
core-bioimage-io-python
Python libraries for loading, running and packaging bioimage.io models
DeepSea
An efficient deep learning model for single-cell segmentation and tracking of time-lapse microscopy images
ElpadoCan
My GitHub profile repository
epiScanpy
Episcanpy: Epigenomics Single Cell Analysis in Python
FastSAM
Fast Segment Anything
napari
napari: a fast, interactive, multi-dimensional image viewer for python
omnipose-acdc
Omnipose: a high-precision solution for morphology-independent cell segmentation
pomBseen
Python implementation of pomBseen
pyqtgraph
Fast data visualization and GUI tools for scientific / engineering applications
pytorch3dunet
3D U-Net model for volumetric semantic segmentation
qtmodern
PyQt/PySide Widgets Modern User Interface
readTheDocs-tutorial
Tutorial for read the docs
scikit-image
Image processing in Python
spec-bioimage-io
Specification for the bioimage.io model description file.
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
stardist
StarDist - Object Detection with Star-convex Shapes
TAPIR
TAPIR: Tracking Any Point with per-frame Initialization and temporal Refinement
YeaZ
An interactive tool for segmenting yeast cells using deep learning.