Elizabeth Brooks's repositories
TranscriptomeAnalysisPipeline_DaphniaUVTolerance
Bash shell scripts for analyzing short RNA sequence reads.
DGEAnalysis_ShinyApps
Shiny application framework for various expression analyses of count data.
NFCDSWorkshop_BeginnersGuide_BioinformaticsDataAnalysis
Primary website for workshop on bioinformatic and biostatistical analysis in the R programming language.
BIOS60132_FinalProject
Repository for the BIOS60132 final project
GBCF_GenomeBrowser
Repository of scripts and files for the GBCF genome browser project.
GBCF_RNASeqAnalysisPipeline
Repository for analysis of RNA-seq data
ModEDI_ModelsOfEvolutionWithDevelopmentalInteractions
A software architecture that incorporates a unique mathematical framework derived by Sean Rice into an object-oriented design that is extendable for custom simulations of user specified populations.
NFCDSWorkshop_BioinformaticsDataAnalysis
Website for workshop on bioinformatic analysis in the R programming language.
NFCDSWorkshop_BioinformaticsPipelineDataAnalysis
Website for workshop on biostatistical analysis in the R programming language.
NFCDSWorkshop_Spring2023
In this workshop participants will learn how to perform biostatistical analysis in the R programming language.
rPlayground
Playground for creating practice R programming content
SpotifyDataMining_Spring2018
Python and Bash shell scripts, in addition to curl and terminal commands for Spotify genre and track feature data mining analysis with resulting plots and figures.
wpPlayground
Playground for creating programming and bioinformatics content for my word press website
autoGrading_sakaiND
Repository for scripts that assist with grading files from Sakai for Notre Dame TAs
BIOS60573_PopModeling_2020
Repository for notes and code for population modeling dynamics and mechanisms
ComparativeGenomicsPipeline_Daphnia
Repository for code to perform comparative genomic analyses for Daphnia
CSCI301_TALabs_WWU
Files for CS 301 labs at WWU, Fall 2016.
DaphniaTranscriptomics_PfrenderLab
Repository for code to perform transcriptomic analyses for Daphnia
EclosionData_Formatting
Scripts for formatting eclosion data using Bash before plotting in R
FormatReferenceDatabases_DADA2
Repository for scripts to format reference databases for DADA2.
GBCF_LargeAffyRMA
Repository for large affymetrix data set RMA normalization
MultiQC
Sets up multiqc container with singularity. Runs fast qc then multi qc on all input files.
NFCDSWorkshop_Fall2022
In this workshop participants will learn how to perform biostatistical analysis in the R programming language.
SP24-BIOS-60132-01
Repository for SP24-BIOS-60132-01 course scripts and information.
UWSISG_Module9_2021
Repository for UW SISG module 9 files
VAC_VirtualAvatarCreator
Customizable avatar developed with Blender, and a test environment with challenges and objectives modeled in Unity.
wpExampleRepository
Example repository for GitHub Version Control Quick Start Guide on the Morphoscape Word Press site