Elisabeth Roesch's repositories
Perspective_Julia_for_Biologists
Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I
neural_ODE_fitting
comparing loss functions in Julia
Workshop_Julia_for_Biologists
Online material for the Workshop: "Julia for Biologists" to be presented at AMSI's BIS 2022: https://bis.amsi.org.au
Bifurcations
Quantifying information content around co-dimension 1 bifurcations.
ElisabethRoesch.github.io
Personal Website
performance_comparison
comparing R, Python, Julia
BioBox.jl
Hybrid model with neural Differential Equations
Catalyst.jl
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software
Chicken.jl
neural ODEs on Single Cell Data
DataInterpolations.jl
A library of data interpolation and smoothing functions
DiffEqFlux.jl
Interactions between DifferentialEquations.jl and Flux.jl
DiffEqMI.jl
Multiple Inits for solving Differential Equations
DiffEqSensitivity.jl
A component of the DiffEq ecosystem for sensitivity analysis
figures
figures for background
Flux.jl
Relax! Flux is the ML library that doesn't make you tensor
HybridModels.jl
dU/dt = ODE + NN
KernelDensity.jl
Kernel density estimators for Julia
model-zoo
Please do not feed the models
MyFirstPackage.jl
This is an example package.
NeuralPDE.jl
Physics-Informed Neural Networks (PINN) and Deep BSDE Solvers of Differential Equations for Scientific Machine Learning (SciML) accelerated simulation
TRR-ACoP2022-Public
Public release version of ACoP2022
Weave.jl
Scientific reports/literate programming for Julia
www.julialang.org
Julia Project website