Efficiency-of-RELAX's repositories
RELAX-on-CYP8B1
Analyze how gaps affect the detection of relaxed selection by 'RELAX' in terms of number of gaps, length of gaps and number of species.
LightGBM
A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.
modeltest
Best-fit model selection
newick_utils
shell tools for processing phylogenetic trees
phylotree.js
Interactive viewer of phylogenetic trees
raxml-ng
RAxML Next Generation: faster, easier-to-use and more flexible
seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
xmr-stak-amd
Monero AMD miner
bioperl-live
Core BioPerl 1.x code
ensembl-compara
The Ensembl Compara Perl API and SQL schema
ForwardGenomics
Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
GC_content_in_sliding_window
Calculate GC% and GC deviation for circular genomes
GenomeAlignmentTools
Tools for improving the sensitivity and specificity of genome alignments
hyphy
HyPhy: Hypothesis testing using Phylogenies
hyphy-gui
Desktop application for HyPhy