Ecological Complexity Lab's repositories
infomap_ecology_package
Package with functions to handle network data and run Infomap, inspired by ecological networks
Plasmid_multilayer_networks
Data and scripts for analysis in Shapiro et al., "Multilayer Networks of Plasmid Genetic Similarity Reveal Potential Pathways of Gene Transmission"
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lab_website
Our lab website
Language:HTMLBSD-3-Clause000
metabolic_corrs_networks_analysis
sharon's project- creating networks of correlations between metabolites in different bacteria strains (before/after evolution) and analyzing them to catch the effect of evolution
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network-navigator
Interactive hierarchical network navigator
Poll_Seed-disp_Multilayer_Patagonia
Codes and data to
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Sequential_LP
We present a temporal optimal link prediction method that is based on the stacking link prediction method.
Language:PythonMIT000
rumen_microbiome_structure
this is a reiteration of microbiome_structure_v2 with cleaner folder tree and fixed intralayer edge weights.
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