Australian Centre for Ecogenomics's repositories
gtdb.ecogenomic.org
https://gtdb.ecogenomic.org/
api.gtdb.ecogenomic.org
https://api.gtdb.ecogenomic.org/
gtdb-release-tk
Toolkit for updating the GTDB to the next release and generating data files for the GTDB website.
gtdb-species-clusters
Toolkit for establishing, updating, and validating GTDB species clusters
data.gtdb.ecogenomic.org
https://data.gtdb.ecogenomic.org/
gtdb-migration-tk
Toolkit for updating the GTDB to the next release and test data
gtdb_precurate
Automatic pre-curation of GTDB trees.
gtdb-lib
An abstraction of objects, files, and third-party tools used by the GTDB. Not intended for public use.
gtdb-itol-decorate
Creates iTOL files for tree decoration, given a set of GTDB genomes.
db.gtdb.ecogenomic.org
GTDB database service
ace-cluster-orchestrator
A template for distributing jobs across the ACE cluster.
ace-conda
ACE specific conda configuration packages.
DeltaPD
DeltaPD is a tool used to determine outliers in a gene tree when compared against a reference tree.
scripts
Public scripts referenced in ACE manuscripts
basespace_project_downloader
Download project fastq files from BaseSpace
ace_seq_job_downloader
Script for downloading data from ACE Sequencing
pfam_search
pfam_scan meets hmmsearch.
APP
Ace Pyrotag Pipeline - wrapper for QIIME and R - interfaces with PyroDB
PhylogeneticM
Feed the tree...