Ecogenomics / APP

Ace Pyrotag Pipeline - wrapper for QIIME and R - interfaces with PyroDB

Ecogenomics/APP Issues

Merged database versions
Updated 11 years ago1
APP does not enforce unique IDs
Updated 11 years ago
use platform-independent chomping of input files
Updated 11 years ago
Removal of spaces in taxonomic strings
Updated 11 years ago
Waste of CPU
Updated 11 years ago
APP should log to a file in the output folder, as well as to STDOUT
Updated 12 years ago
app_make_results.pl custom databases not working
Closed 12 years ago1
app_otu_to_krona.pl is broken
Closed 12 years ago1
Bug in table based normalization with custom databases
Updated 12 years ago
Skip beta diversity analyses when there is a single sample
Closed 12 years ago1
Sanity checking - number of reads after split_libraries
Closed 12 years ago1
FASTA file lookup too narrow
Closed 12 years ago1
Resuming app_make_results
Updated 12 years ago
app_combine forgets configuration
Updated 12 years ago
Error with APP 2.3.3
Closed 12 years ago3
Option to make up quality scores
Updated 12 years ago1
usearch threads are hard coded
Updated 12 years ago