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EUCANCan

EUCANCan

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European-Canadian Cancer Network

Home Page:https://eucancan.com/

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EUCANCan's repositories

variant-extractor

Deterministic and standard extractor of SNVs, indels and structural variants (SVs) from VCF files.

Language:PythonLicense:MITStargazers:3Issues:7Issues:3

bioinfo-pipelines

Bioinformatics pipelines to analyse whole-genome / whole exome sequencing data for tumors

Language:DockerfileLicense:GPL-3.0Stargazers:1Issues:7Issues:0

oncoliner

A comprehensive benchmarking platform for monitoring, improving and harmonizing somatic variant calling across genomic oncology centers.

Language:PythonLicense:NOASSERTIONStargazers:1Issues:3Issues:1

prepy-wrapper

Wrapper for pre.py from Illumina's hap.py package. It is used to preprocess VCF files in order to normalize SNVs and indels for downstream analysis.

Language:PythonLicense:MITStargazers:0Issues:5Issues:0

variant-callers

Scripts and containers to run the variant callers originally used in ONCOLINER

Language:ShellLicense:BSD-3-ClauseStargazers:0Issues:0Issues:0