Elias Kuthe's repositories
barnacleboy
merfish playground
bin2c.py
Create a C source and header file out of one or more binaries
cli-wg
CLI working group
cvxpy
A Python-embedded modeling language for convex optimization problems.
Debugger.jl
Julia debugger
fast5
A C++ header-only library for reading Oxford Nanopore Fast5 files
fast5_research
Fast5 API provided by ONT Research
gfl
A fast and flexible algorithm for solving the graph-fused lasso
l1_tf
A wrapper for L1 trend filtering via primal-dual algorithm by Kwangmoo Koh, Seung-Jean Kim, and Stephen Boyd
levAdapt
Nanopore adaptaters ressearch using levenstein neighborhood of kmers.
LightGraphs.jl
An optimized graphs package for the Julia programming language
mako
Analyte identification via squiggles.
nanoraw
Genome guided re-segmention and visualization for raw nanopore sequencing data.
networkx
Official NetworkX source code repository.
Pkg.jl
Pkg - package manager for the Julia language
poretools
a toolkit for working with Oxford nanopore data
pybind11
Seamless operability between C++11 and Python
pyexcel-ezodf
ezodf is a Python package to create new or open existing OpenDocument (ODF) files to extract, add, modify or delete document data, forked from dead project https://bitbucket.org/mozman/ezodf
pyexcel-odsw
Writer an ods using loxun XMLWriter with constant memory
rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
rustlings
Small exercises to get you used to reading and writing Rust code
scrappie
Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
snakemake-github-action
A Github action for running a Snakemake workflow
zbar
ZBar is an open source software suite for reading bar codes from various sources, including webcams. As its development stopped in 2012, I took the task of keeping it updated with the V4L2 API. This is the main repository for it. There's a clone at at LinuxTV.org, and another one at gitlab.