EPPIcenter's repositories
THEREALMcCOIL
A Markov chain Monte Carlo method that estimates complexity of infection and population allele frequencies using SNP data obtained from Sequenom or similar types of SNP assays.
MicroSPAT
MicroSPAT- MicroSatellite Parameterized Analysis Tools A collection of tools for semi-automated analysis of raw capillary electrophoresis (CE) data output by the ABI 3730, and has been designed specifically for working with multi-allelic samples. Developed to improve reproducibility and consistency of microsatellite analysis between analysts.
ProteinArrays
comparison of GBL and Genepix
liinc-Ab-dynamics
Source code and data for 'SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay'
bolinas-analysis
Source code for 'Universal PCR and antibody testing demonstrate little to no transmission of SARS-CoV-2 in a rural community'
ClinEpiDB_transmission_data
Oocyst and bloodstage haplotype data from PRISM2
COVID_ITSA
Data and code for COVID ITSA
eppicenter.r-universe.dev
The EPPIcenter R-Universe
flexfitTemp
Temporary version of flexfit that allows for extrapolation (R package)
geno_timelines
visualization of longitudinal qPCR or genotyping data
Kihihi_MS_genotyping
Within-household clustering of genetically related Plasmodium falciparum infections in a moderate transmission area of Uganda
lab-handbook
EPPIcenter Lab Handbook
PBC_Covid_serology
Seroprevalence of Antibodies to SARS-CoV-2 in rural households in eastern Uganda, 2020-2022
scale-it
Source code for 'Citywide serosurveillance of the initial SARS-CoV-2 outbreak in San Francisco'
sex_based_differences
Sex-based differences in clearance of chronic Plasmodium falciparum infection