EPFL Center for Imaging's repositories
napari-imaging-epfl-2023
Image analysis with Python and Napari.
napari-cursor-tracker
Napari plugin for easy manual annotation of 3D or 2D + t dataset by following the cursor.
pyxu-cone-beam
Computational Tomography Suite for Cone Beam X-Ray data using Pyxu.
pyxu-tutorial
Material accompanying the Pyxu tutorial presentation
api-py-algos
API to run Python-based image processing algorithms
basics-GPU-image-proc
Material for the imaging lunch "Basics of gpu acceleration for image processing
image-analysis-field-guide
Scientific image analysis resources and examples.
napari-bee-annotator
Napari plugin for the annotation of bee entering and leaving the hive.
napari-magic-wand
"Magic wand" annotation in Napari.
napari-melt-pool-tracker
Napari plugin for tracking the width and depth of the melt pool and keyhole in x-ray images of laser powder bed fusion experiments.
napari-rembg
AI-based image segmentation in Napari.
napari-z-plotter
Interactively plot the image intensity along the depth axis of a 3D image dataset.
accel-large-image-proc-talk
Slides and notebook for talk: Accelerated large-scale image procesing in Python
dask
Parallel computing with task scheduling
docker-web-gui
A simple web based GUI for managing Docker containers and images
ij-plugin-pyalgos
ImageJ/Fiji plugin to run Python-based image processing algorithms
mousetumornet
A model for lung tumor nodules segmentation in mice CT scans.
napari-floodfill
Interactive object annotation in Napari using a flood fill tool.
napari-label-focus
Easily focus the view on selected elements from a Labels layer.
napari-live-histogram
Display the image histogram in Napari.
napari-orientationpy
Analyze orientations in 2D, 3D, and RGB images in Napari.
napari-remove-objects
A simple tool to remove objects in a Labels layer in Napari by clicking on them.
napari-woggle-opacity
Dynamically change layer opacity in Napari.
qupath-extension-pyalgos
Qupath extension to run Pyhton-based image processing algorithms