ENCODE DCC's repositories
long-rna-seq-pipeline
STAR based ENCODE Long RNA-Seq processing pipeline
s3-md5-hash
Lambda function to compute MD5 hashes of S3 objects
aws-genomics-workflows
Genomics Workflows on AWS
bigwig-reader
Typescript library for reading BigWig and BigBed files.
chromhmm-pipeline
WDL pipeline for chromhmm
gcs-s3-transfer-service
A Flask service on Google App Engine to upload files from Google Cloud Storage to AWS S3
ptools_bin
Ptools to pypi
bioconda-recipes
Conda recipes for the bioconda channel.
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
devservers-encoded
Encoded application development server deployment
Engine
WebGL graphics, animation and UI engine
Genomics-Formats
Parsers and types for working with popular genomics formats
GPUText
Engine-agnostic WebGL text rendering
integrative_analysis_chip
ChIP-Seq pipeline for integrative analysis (modified for caper/docker support)
locust-stress-testing
Send requests parsed from apache access log
pytest_exact_fixtures
Make pytest fixtures work more like zope.testrunner layers
qc-utils
QC infrastructure common to several pipelines
replica-infrastructure
Infrastructure for testing encoded releases
subprocess_middleware
Subprocess WSGI middleware and Pyramid tween.
TRACE_GPU_WDL
Boyle lab TRACE_GPU as WDL pipeline