ENCODE-DCC / long-read-rna-pipeline

ENCODE long read RNA-seq pipeline

ENCODE Long read RNA-seq pipeline

OVERVIEW

This is the ENCODE-DCC Long read RNA-seq pipeline. This pipeline can handle data from both PacBio and Oxford Nanopore platforms. Pipeline does read alignment, corrects for mismatches, microindels and non-canonical splice junctions and then provides quantitations and QC-metrics.

INSTALLATION

Installation instructions here

HOWTO

Howto guides here

INPUTS

Description of the pipeline inputs

OUTPUTS

Description of the pipeline outputs

REFERENCE

Reference here