EGA-archive / ega-htsjdk

A fork of HTSJDK with EGA specific enhancements

EGA HTSJDK

EGA-specific HTSJDK fork, for original sources refer to https://github.com/samtools/htsjdk

Licensing Information

We are republishing the fork with our modifications under the same original licenses. Not all sub-packages of htsjdk are subject to the same license, so a license notice is included in each source file or sub-package as appropriate. Please check the relevant license notice whenever you start working with a part of htsjdk that you have not previously worked with to avoid any surprises. Broadly speaking the majority of the code is covered under the MIT license with the following notable exceptions:

• Much of the CRAM code is under the Apache License, Version 2
• Core tribble code (underlying VCF reading/writing amongst other things) is under LGPL
• Code supporting the reading/writing of SRA format is uncopyrighted & public domain