Drexel's EESI Lab.'s repositories
Scorpio
Scorpio: Advancing Embeddings for Superior Biological Sequence Analysis
Naive_Bayes
A Naive Bayes classifier for metagenomic data.
FDSL_Evo
Repository for code from Streamlining Computational Fragment-Based Drug Discovery through Evolutionary Optimization Informed by Ligand-Based Virtual Prescreening
bio-course-materials
Course materials for a bioinformatics course.
Complet-Plus
Complet-Plus by Rachel Nguyen and Drexel EESI Lab
covid_severity
Predicting COVID-19 Disease Severity from Spike Genotype Based on Global Sequencing Data
Covid
SARS-CoV-2 Spike Sequence Variant Analysis Using Interpretable Deep Learning
PTAB
Analysis and Outcome Prediction for USPTO Patent Trial and Appeals Board proceedings and decisions.
MetaMutationalSigs
https://hub.docker.com/r/pp535/metamutationalsigs
TEA
(Taxa Evaluation and Assessment) Parse, organize, calculate and save data from metagenomic profile files
sequence_attention
Learning, Visualizing and Exploring 16S rRNA Structure Using an Attention-based Deep Neural Network
BioDS_NCBI-Biopython_Notebooks
Notebooks to introduce biopython
SSIL
Information and related links about the semi-supervised incremental learning project
Learning-ML-Microbiome-Analysis-in-R
Various tutorials and code from classes taught and previous work.
inbc-supporting-information
Supporting Information of "Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life"
Comp_Metagenomics_resources
Materials for Computational Metagenomics class developed for NSF TUES project