Yinjun Harold JIA's repositories
Diffusion-LM
A replication of Diffusion-LM Improves Controllable Text Generation
DrugCLIP_screen_pipeline
A hybrid pipeline to screen compounds with DrugCLIP and Schrodinger
Denoising_Diffusion_Implicit_Models
A replication of Denoising Diffusion Implicit Models paper with pytorch and ViT
Bayesian_Flow_Networks
A replication of Bayesian Flow Networks paper with pytorch and ViT
RodentTracker
An open-source tracking toolkit for EPM of OFT assay of mice or rats.
Rectified_Flow
A replication of rectified flow paper with the Oxford Flowers dataset
Dock-MD-FEP
Open Source, Automated free binding free energy calculation between protein and small molecule. An all-in-one workflow, free energy pertubation with OpenMM.
DPAM
A domain parser for Alphafold models
PaddleHelix
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
perfumenuke
An open-source perfume formulation tool and material database
PoinTr
[ICCV 2021 Oral] PoinTr: Diverse Point Cloud Completion with Geometry-Aware Transformers
PositionalEncoding2D
A PyTorch implementation of the 1d and 2d Sinusoidal positional encoding/embedding.
prodigy
Repository containing various scripts to predict the binding affinity of protein-protein complexes from structure
REMC
Replica Exchange Monte Carlo with Fragmove for Protein Structure Prediction
nablaDFT
nablaDFT: Large-Scale Conformational Energy and Hamiltonian Prediction benchmark and dataset
tiny_IFD
Lightweight induced fit docking
WIKI
Ramirez Lab WIKI, where you could find Tutorials, Script Library, Gallery, FAQ, and a little bit more