Dragonmasterx87

ssGSEA2.0

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

SCpubr

Generate high quality, publication ready visualizations for single cell transcriptomics data.

CompBio1-Tulane

Intro-to-ChIPseq

Intro to ChIPseq using HPC

signac

R toolkit for the analysis of single-cell chromatin data

seurat-wrappers

Community-provided extensions to Seurat

bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data

cellula

Simple implementation of different single cell RNA-seq methods

street-fighter-ai

This is an AI agent for Street Fighter II Champion Edition.

AR-DHT

fastq-dl

Download FASTQ files from SRA or ENA repositories.

borges

Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data

escape

Easy single cell analysis platform for enrichment

Microvasculature_T1D

E-MTAB-6141

Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.

NICHES

Niche Interactions and Cellular Heterogeneity in Extracellular Signaling

scCustomize

R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

Bioinformatics-training-collection

A collection of resources for learning about tools and programming languages related to Bioinformatics

scGeneFit-python

Python code for genetic marker selection using linear programming

github-readme-stats

:zap: Dynamically generated stats for your github readmes

Seurat-to-RNA-Velocity

A guide to using a Seurat object in conjunction with RNA Velocity

RPPA

R functions for analysing RPPA data from the Zeptosen system

waddR

R package for detecting differential distributions using a statistical test based on the wasserstein distance

DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

UCLA-T32

UCLA T32 Single-Cell Analysis Workshop

The-world-of-faculty

resources for faculty

Interactive-3D-Plotting-in-Seurat-3.0.0

This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

seurat

R toolkit for single cell genomics

scRNA.seq.datasets

Collection of public scRNA-Seq datasets used by our group