Experiments using python stack with taichi and tensorstore / brainmaps / DVID sources.
Base conda with python 3.10
Make sure you have the most recent conda then install libmamba solver
conda update -n base conda
conda install -n base conda-libmamba-solver
conda config --set solver libmamba
Activate your conda env of choice, then install:
conda install -c conda-forge jupyterlab
conda install ipykernel
conda install typer
# conda install pytorch from website
pip install tensorstore
pip install taichi
Set the following environment variables:
GRAYSCALE_BUCKET
to reflect a valid tensorstore reference, e.g., a GCS bucket like gs:my-bucket-name
.
GOOGLE_APPLICATION_CREDENTIALS
to the GCP credentials JSON file if using Google services.