Dinindu Senanayake's repositories
acrfinder
AcrFinder, a tool for automated identification of Acr-Aca loci
AutoHiC
A novel genome assembly pipeline based on deep learning
BIOSCI701-NeSI_Jupyter_Login
Login and troubleshooting instructions for NeSI Jupyter Services.
cit-hpc-easybuild
EasyBuild files, which are used on our local facilities
dokdo
A Python package for microbiome sequencing analysis with QIIME 2
drep
Rapid comparison and dereplication of genomes
feat
A feature engineering automation tool for learning data representations
ga-mkdocs-template
mkdocs test repository
ganesi_authesetup-login
instructions : setting up authentiation factor and login to Mahuika jupyter
herro
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1, Kit 14, Ultra-long (UL) reads.
hpc-intro-dl
Introduction to running deep learning code on NeSI
iab2
An Introduction to Applied Bioinformatics, 2nd Edition
jloh
A tool to extract LOH blocks from VCF, BAM and FASTA data
julia-on-hpc-systems
Information on how to set up Julia on HPC systems
locator
deep learning prediction of geographic location from individual genome sequences
mcclintock
Meta-pipeline to identify transposable element insertions using next generation sequencing data
MetaBarFlow
Workflow for processing NGS data from metabarcoding experiments
METABOLIC
A scalable high-throughput metabolic and biogeochemical functional trait profiler
singlem
De-novo OTUs from shotgun metagenomes
singularity-mpi-onMahuikaCluster
singularity-mpi-onMahuikaCluster
TourOfJulia.jl
A tour of the Julia programming language
vimrc
The ultimate Vim configuration (vimrc)
wf-human-variation_split
wf-human-variation_split