Ding Luo's repositories
data-science-from-scratch
code for Data Science From Scratch book
DeepLearning
Python for《Deep Learning》,该书为《深度学习》(花书) 数学推导、原理剖析与源码级别代码实现
denvis
Deep Neural Virtual Screening (DENVIS)
DLKcat
Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction
EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
lm-gvp
LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure
localcolabfold
ColabFold on your local PC
ml-visuals
🎨 ML Visuals contains figures and templates which you can reuse and customize to improve your scientific writing.
nn4dms
Neural networks for deep mutational scanning data
openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
PIPPack
Implementation of Protein Invariant Point Packer (PIPPack)
plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
PROST
A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. PROST uses colab AlhpaFold2 for the prediction of pdb struture from FASTA sequence.
protein_generator
Joint sequence and structure generation with RoseTTAFold sequence space diffusion
ProteinMPNN
Code for the ProteinMPNN paper
PyTorch-VAE
A Collection of Variational Autoencoders (VAE) in PyTorch.
statistic
collecting books, papers and docs.
TankBind
Open source code for TankBind. Galixir Tenchnologies
tuning_playbook_zh_cn
一本系统地教你将深度学习模型的性能最大化的战术手册。
xmu-daily-report
长期维护,无需本地部署,在线fork仓库即可使用的厦大Daily Health Report 健康打卡自动填写脚本