Ding Luo's repositories
openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
PIPPack
Implementation of Protein Invariant Point Packer (PIPPack)
ProteinMPNN
Code for the ProteinMPNN paper
PyTorch-VAE
A Collection of Variational Autoencoders (VAE) in PyTorch.
protein_generator
Joint sequence and structure generation with RoseTTAFold sequence space diffusion
test
test for github
tuning_playbook_zh_cn
一本系统地教你将深度学习模型的性能最大化的战术手册。
data-science-from-scratch
code for Data Science From Scratch book
TankBind
Open source code for TankBind. Galixir Tenchnologies
statistic
collecting books, papers and docs.
EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
ml-visuals
🎨 ML Visuals contains figures and templates which you can reuse and customize to improve your scientific writing.
nn4dms
Neural networks for deep mutational scanning data
denvis
Deep Neural Virtual Screening (DENVIS)
DLKcat
Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction
xmu-daily-report
长期维护，无需本地部署，在线fork仓库即可使用的厦大Daily Health Report 健康打卡自动填写脚本
localcolabfold
ColabFold on your local PC
PROST
A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. PROST uses colab AlhpaFold2 for the prediction of pdb struture from FASTA sequence.
lm-gvp
LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure
plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
DeepLearning
Python for《Deep Learning》，该书为《深度学习》(花书) 数学推导、原理剖析与源码级别代码实现