DINESHR's repositories
Amber-MD-Simulation
A Generalised workflow for obtaining protein and peptide molecular structures, docking the peptide into the protein and running a molecular dynamic simulation over a large number of trajectories.
Analyse_your_genome
A google collab file to analyze your genome
Awesome_BigData_AI_DrugDiscovery
A collection of resources useful for leveraging big data and AI for drug discovery. It mainly serves as an orientation for new lab folks. It may be biased towards my lab interest.
Bioinformatics
Single-Cell
bioinformatics_curriculum
Some ideas on things to learn to get started with bioinformatics
Cancer_Biomarker
Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines
chembl_webresource_client
Official Python client for accessing ChEMBL API
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
ChIPseqSpikeInFree
A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications
CnRAP
Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.
dineshravindraraju.github.io
Personal Website
eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
freebayes
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
From-0-to-Research-Scientist-resources-guide
Detailed and tailored guide for undergraduate students or anybody want to dig deep into the field of AI with solid foundation.
Intro-to-ChIPseq
Intro to ChIPseq using HPC
lazypredict
Lazy Predict help build a lot of basic models without much code and helps understand which models works better without any parameter tuning
LLMS_Library_2023
LLM_library is a comprehensive repository serves as a one-stop resource hands-on code, insightful summaries.
MaPhi
MaPhi is a program written in python for Linux, which compute descriptors for a set of molecules for chemoinformatics studies.
Microbialgenomics
Prokaryotic Genome Annotation Pipeline
MolecularNodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
OpenChem
OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research
RFdiffusion
Code for running RFdiffusion
RNA-Seq-mini-project
The project explores RNASeq analysis pipelines and their codes/scripts. Comparison report between the pipelines is provided at the end of analysis with preferred tools outline.
Sniffles
Structural variation caller using third generation sequencing
teachopencadd
TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data
training-collection
Collection of bioinformatics training materials