Diellor Basha's repositories
BIDS-BrainSuite
BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.
BIDS-freesurfer
BIDS app wrapping recon-all from FreeSurfer
BIDS-SPM
BIDS App containing an instance of the SPM software.
brainstorm3
Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology
brainstorm_pet
MATLAB project files for the development of PET integration functions for the Brainstorm neuroimaging software. This module will support importing, processing, visualizing, and analyzing multimodal datasets including MRI, MEG, and PET.
CellExplorer
CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.
dockerfile-templates
Dockerfile templates commonly used in BIDS Apps
matlab-compiler-runtime
Base image with Matlab Compiler Runtime (MCR)
MATLAB_for_Electrophysiology
A set of custom routines used in published studies, focusing on the analysis of local field potential and spike train oscillations in animal recordings of natural sleep/wake cycles.
SWR-detection
Code in Spike2 script language
tracula
implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.