DieTANG

PiGBS_Pipeline

Parent-independent genotyping of diploid potato

3d-dna

3D de novo assembly (3D DNA) pipeline

coursera-ml-py

Python programming assignments for Machine Learning by Prof. Andrew Ng in Coursera

CourseraML

I took Andrew Ng's Machine Learning course on Coursera and did the homework assigments... but, on my own in python because I love jupyter notebooks!

dietang.github.io

hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Juicebox

Visualization and analysis software for Hi-C data -

minigraph

Proof-of-concept seq-to-graph mapper and graph generator

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

wtdbg2

Important update of wtdbg