DeribaAbera1234's repositories
AgamPrimer
Primer Design in Anopheles gambiae considering genetic variation
anopheles-genomic-surveillance.github.io
Lecture notes for a course on genomic surveillance of malaria vectors, developed by PAMCA and MalariaGEN
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
binder
Repository with installation scripts and environment definitions for conda and texlive, for standardising environments across the MalariaGEN resource centre team.
BOSS-Events
Core repo for OpenScienceKE and BHKi joint events funded by Code for Science & Society (CS&S)
COG-Train_Resources
cogtrain_resources
epi2me-api
API for communicating with the EPI2ME Platform for nanopore data analysis. Used by EPI2ME Agent & CLI.
gatk
Official code repository for GATK versions 4 and up
GSBAfrica2023
GSBAfrica course manual site
h3agwas
GWAS Pipeline for H3Africa
hmmIBD
A hidden Markov model for detecting segments of shared ancestry (identity by descent)
ipyleaflet
A Jupyter - Leaflet.js bridge
labs
Rmd source files for the HarvardX series PH525x
malariaAtlas
An R interface to open-access malaria data, hosted by the Malaria Atlas Project.
malariagen-data-python
A Python package providing convenience functions for accessing MalariaGEN data.
MelBioInf_docs
Melbourne Bioinformatics documentation in markdown format
metacoder
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
node-accreditation
Collection of scripts and items for node accreditation
OpenScienceKE
Page for Open Science in Bioinformatics Worskop on 9th and 10th August, 2018.
pipelines
Pipelines for processing malaria parasite and mosquito genome sequence data.
popgen
Scripts for Population Genetic Analysis of any genotype data
Python4BioinformaticsV2
Updated materials for MSc Bioinformatics for Pwani University
ReproducibleResearchRStudio
This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.
TeachingJupyterNotebooks
Training materials for the Open Science Workshop held in Nariobi
training
Nextflow training material