Deon de Jager's repositories
Buffalo_PopGenomics
Scripts for processing and analysing resequencing data, as well as R scripts for producing figures from some of the results for the manuscript: de Jager, D. et al. High diversity, inbreeding and a dynamic Pleistocene demographic history revealed by African buffalo genomes. Sci. Rep. 11, 4540, doi:10.1038/s41598-021-83823-8 (2021).
Friends-and-Family
Repository for the population genetics software program, Friends and Family. Manuscript here: https://onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.12691.
Buffalo_Mitogenomics
Pre-print manuscript
git-GitHub-course
Test repository for Center for Health Data Science git and GitHub course on 22 May 2024
Raphicerus_mitogenomes
Contains scripts used in the Cape and Sharpe's grysbok mitogenome announcement paper.
Rscripts-for-buffalo-microsat-paper
Contains the R scripts and necessary input files used for drawing the figures and conducting the DAPC analysis for the manuscript: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0236717