DeMarcoLab

juno

juno is a simulation package for optical system design using full wave propagation.

fibsem

A universal API for FIBSEM control

autolamella

autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.

piescope_gui

GUI for DeMarco lab FIB-SEM controls.

correlateim

Correlate images using matched control points. Based on https://github.com/adal02/cpselect

piescope

Back end library for PIE-scope integrated cryo-correlative light and FIB/SEM microscopy

salami

salami is a python package for volume electron microscopy

3DCT

This Toolbox is build for 3D correlative microscopy. It helps with 3D to 2D correlation of three dimensional confocal image stacks to two dimensional SEM/FIB dual beam microscope images.

imagereg

GPU accelerated image registration

napari-openfibsem

hachiko

An extremely simple asyncio-compatible wrapper around Watchdog.

openCLEM

A universal API for Light Microscopy

vulcan

grayscale lithography

bandpass-filter-gui

A simple GUI to visualize bandpass filtering with different parameters.

IMP

Integrated Microscopy and Proteomics

imp_preprocessing_pipelines

Pipelines to create neuroglancer formats from EM data, along with segmentations or object lists. Raw output can be used in neuroglancer, or used in IMP project to have an interactive app.

openfibsem-docs

Documentation site for the OpenFIBSEM project