DavisVaughan / SIPmg

This repo is for the R package, SIPmg, for integrating metagenomics with stable isotope probing

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Package description: SIPmg is a statistical analysis package as part of a stable isotope probing (SIP) metagenomics study to identify isotope incorporating MAGs.The package utilizes either the qSIP model, ΔBD method, or DeSeq2-based methods such as HR-SIP and MW-HR-SIP based on the HTSSIP package. For more information on HTSSIP R package, please visit their vignette

For more information about SIPmg and how to use it, please see the SIPmg vignette

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This repo is for the R package, SIPmg, for integrating metagenomics with stable isotope probing


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