DavidStreid's repositories
jwt-in-cookie
Wrapper around the functionality of "jsonwebtoken" to easily set and validate JWT tokens via http cookies
alleleCount
Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)
bamkit
Tools for common BAM file manipulations
bio_docker
Collection of docker images containing bioinformatic tools
bioinformatics
Bioinformatic Scripts
bioinformaticScripts
scripts for biomaRT
CellRangerParser
Parses cell ranger data
DataStructures
Data Structures
fastq-compression
Test of compression ratio and speed of popular generic compression algorithms
flask-react-app
Simple Flask Server
hello-world-docker-action
Testing Docker Container Action
lsf-bioinformatics
Personal LSF pipeline helper
lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
markdown_readme
Markdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.
metagenome_analyzer
Shows how a parsed metagenome
nextflow_patterns
Repo of patterns in nextflow
nf-core-tools
Python package with helper tools for the nf-core community.
nodeServer_docker
Node Server with Docker Deployment
object-modal
Modal that updates based on an input object
react-webpack-babel
Reference for configuring react w/ babel
svtyper
Bayesian genotyper for structural variants
UNCE_Processing
Download of Processing of UNCE database of non-coding ultraconserved coding elements
variant-call-format-parser
Parser of genetic data from Variant Call Format files
viral-profiler
Application that analyzes sequencing data taken from viral-infected subjects