This code base is using the Julia Language and DrWatson to make a reproducible scientific project named
EffortlessBasinsOfAttraction
It is authored by George Datseris, Alexandre Wagemakers.
To (locally) reproduce this project, do the following:
- Download this code base. Notice that raw data are typically not included in the git-history and may need to be downloaded independently.
- Open a Julia console and do:
julia> using Pkg julia> Pkg.add("DrWatson") # install globally, for using `quickactivate` julia> Pkg.activate("path/to/this/project") julia> Pkg.instantiate()
This will install all necessary packages for you to be able to run the scripts and everything should work out of the box, including correctly finding local paths.
The script that reproduces the main figure of our paper is in scripts/figure_with_everything.jl. The code infastructure that allows this script to be so clean is in src/produce_basins.jl. In short, a configuration structure BasinConfig is defined. This structure contains the info for the system, its parameters, and keywords for estimating the basins. The structure is given in the function produce_basins, which unrolls everything inside and calls the function basins_of_attraction from the DynamicalSystems.jl package.