DarkShrill / RNA-Nussinov

Project of Algoritmi e Strutture Dati. To realize in Java an implementation of Nussinov's algorithm that, given a sequence of nucleotides, finds a pseudonode-free RNA secondary structure with a maximum number of weak bonds. The problem is to be solved using the dynamic programming technique.

RNA-Nussinov

Hi! I'm Edoardo and i'm a student of Sapienza University and a worker. This repository was made into my free time for have fun.

Let's start

Project of Algoritmi e Strutture Dati. To realize in Java an implementation of Nussinov's algorithm that, given a sequence of nucleotides, finds a pseudonode-free RNA secondary structure with a maximum number of weak bonds. The problem is to be solved using the dynamic programming technique.

Project Goals:

• Realize in Java an implementation of Nussinov's algorithm that, given a sequence of nucleotides, finds a pseudonode-free RNA secondary structure with a maximum number of weak bonds. The problem is to be solved using the dynamic programming technique.
• Build a JUnit 4 test suite that checks the implemented functionality.
• Evaluate numerically the performance of the implemented algorithm.
• Write a report on the project and make an oral presentation of it using slides and the written code.

LINKS:

CLICK HERE FOR VIEW A ASSIGNMENT OF PROJECT (PDF)

CLICK HERE FOR VIEW A REPORT OF PROJECT (PDF)

CLICK HERE FOR VIEW PERFORMANCE EVALUATION (PDF)

ENJOY :)