DannyArends

D-coding

Basic tools written in the D programming language, to learn the language and test out idea's

GBIC

R packages developed by Groningen BioInformatics Centre

iqtl

Some tools and code I use in QTL mapping, and for testing R related code

PLINK2RQTL

Convert PLINK data to R/qtl format

rqtl-mqm

R/QTL with MQM support

3Dto2DApplet

Java project to create an applet/awt interface to render 3D gfx and 2D gui's

happy

Fork of the Happy QTL mapping software source code

DannyArends.github.io

Testing github pages

Other

A space to store some older projects and other stuff

qtlHD

Re-implementation of R/qtl with clean code, aimed at high-density, high-throughput data

BLASTnParse

BSE

R package for calculating bridge sampling estimators

Code

DOQTL

QTL mapping for Divertiy Outbred mice (and other multi-founder advanced intercrosses)

genenetwork2_diet

Git source repo on a diet

ggplot2

An implementation of the Grammar of Graphics in R

gn2-docker

GeneNetwork2 development server installation

GNapi

R package for connecting to the GeneNetwork API

linreg

Multiple linear regression in D

ludeCode

Code I created for the analyse Affymetrix and Illumina arrays

Memphis

Code produced during my trip to Memphis (TN)

SeedQualityQTL

Script used in "Visualizing the genetic landscape of Arabidopsis seed performance"

swift-app

Learning swift

swift-bindings

Bindings to external libraries for swift

systemsgenetics

Tools used by the genetics department of the UMCG for systems genetics analysis

Thesis

My PHD thesis