DaisukeMiyamoto

Daisuke Miyamoto's starred repositories

YOLOX

YOLOX is a high-performance anchor-free YOLO, exceeding yolov3~v5 with MegEngine, ONNX, TensorRT, ncnn, and OpenVINO supported. Documentation: https://yolox.readthedocs.io/

Language:PythonApache-2.09249 77 1478

llm-foundry

LLM training code for Databricks foundation models

Language:PythonApache-2.03921 47 369

napkin-math

Techniques and numbers for estimating system's performance from first-principles

Language:RustMIT3418 91 15

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Language:PythonApache-2.02681 47 338

ChatGPT-Robot-Manipulation-Prompts

MIT353 10 2

NeuralPLexer

NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model

Language:Jupyter NotebookBSD-3-Clause-Clear244 5 48

Uni-Dock

Uni-Dock: a GPU-accelerated molecular docking program

Language:C++NOASSERTION180 9 60

awsome-distributed-training

Collection of best practices, reference architectures, model training examples and utilities to train large models on AWS.

Language:PythonMIT-0158 8 101

alphapeptdeep

Deep learning framework for proteomics

Language:Jupyter NotebookApache-2.0104 9 70

DD_protocol

Official repository for the Deep Docking protocol

Language:PythonMIT93 4 10

This is the official github mirror repository of FrontISTR, Open-Source Large-Scale Parallel FEM Program for Nonlinear Structural Analysis. Active developments of FrontISTR are hosted on https://gitlab.com/FrontISTR-Commons/FrontISTR.

Language:RoffMIT88 19 7

aws-batch-arch-for-protein-folding

Language:PythonApache-2.068 20 23

aperf

A CLI tool to gather performance data and visualize using HTML graphs. Data from multiple collection runs can be viewed side-by-side, allowing for easy comparison of the same workload across different system configurations.

Language:RustApache-2.053 12 4

libfabric

AWS Libfabric

Language:CNOASSERTION34 150

pzbcm

Basic Common Modules

Language:SystemVerilogApache-2.034 4 8

CryoREAD

CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.

Language:Python28 4 4

genesis

Source, test set, and document for Molecular Dynamics software, GENESIS.

Language:FortranLGPL-3.027 9 1

public_binding_free_energy_benchmark

The public versio

Language:PythonMIT27 50

ArmoniK

Main repository for ArmoniK, An Open-Source orchestrator based on Kubernetes managing the distribution of hybrid multi cloud computations

Language:Jupyter NotebookApache-2.025 9 859

awesome-protein-analysis-on-aws

A curated list of resources for protein analysis on AWS

MIT-020 70

open-omics-alphafold

Language:PythonApache-2.017 5 4

alphafold-protein-structure-prediction-with-frontend-app

Language:TypeScriptNOASSERTION16 5 5

amazon-omics-webapp-integrations

This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operate Amazon Omics workflow easily and check the run command status with charts and tables.

Language:VueMIT-015 4 10