Daguilin's starred repositories
Gene_Metab_Pheno
Codes used in "Exploiting the mediating role of the metabolome to unravel transcript-to-phenotype associations" (Auwerx et al, bioRxiv 2022)
Single-Cell-Metabolic-Landscape
Pipeline for exploring metebolic heterogeneity at single-cell resolution
AC-ICAM-NM
Code related to the 2023 AC-ICAM manuscript in Nature Medicine.
PCAworkshop
An introduction to matrix factorization and PCA and SVD.
bioinfo-combio
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
immune.overdrive
main.code.for.immune.overdrive
StemnessIndex
Providing the absolute human stemness index based on the gene pairs.
ggRandomForests
Graphical analysis of random forests with the randomForestSRC, randomForest and ggplot2 packages.
ggtree-current-protocols
Using ggtree to Visualize Data on Tree-Like Structure