fatalx: No samples:

Question

fatalx: No samples:

syauwjl opened this issue 5 years ago · comments

syauwjl commented 5 years ago

THE INPUT PARAMETERS

##PARAMETER NAME: VALUE
genotypename: Rsa.geno

snpname: Rsa.snp.chr_change

indivname: Rsa.ind

popfilename: popfilers

f4mode: YES

qpDstat version: 900

Rsa.snp.chr_change: genetic distance set from physical distance
number of quadruples 120
fatalx:
No samples: Bra

#################################
part of my popfile
Bra RS01 RS02 RS03
Bra RS01 RS02 RS04
Bra RS01 RS02 RS05
Bra RS01 RS02 RS06
Bra RS01 RS02 RS07
Bra RS01 RS02 RS08
Bra RS01 RS02 RS09
Bra RS01 RS02 RS10
Bra RS01 RS03 RS04
Bra RS01 RS03 RS05
Bra RS01 RS03 RS06
Bra RS01 RS03 RS07
Bra RS01 RS03 RS08
#################################
part of my popfile
my indiv file:
Bra U POP1
RS01 U POP2
RS02 U POP3
RS03 U POP4
RS04 U POP5
RS05 U POP6
RS06 U POP7
RS07 U POP8
RS08 U POP9
RS09 U POP10
RS10 U POP11

Thanks!

bumblenick · Answer 1 · Sun Mar 15 2020 09:56:05 GMT+0800 (China Standard Time)

qpDstat runs on populations not samples. Bra is not a population but a sample. I think if you had looked carefully at an example you could have caught this. Nick

…

On Sat, Mar 14, 2020 at 9:36 PM syauwjl ***@***.***> wrote: THE INPUT PARAMETERS ##PARAMETER NAME: VALUE genotypename: Rsa.geno snpname: Rsa.snp.chr_change indivname: Rsa.ind popfilename: popfilers f4mode: YES qpDstat version: 900 Rsa.snp.chr_change: genetic distance set from physical distance number of quadruples 120 fatalx: No samples: Bra ################################# part of my popfile Bra RS01 RS02 RS03 Bra RS01 RS02 RS04 Bra RS01 RS02 RS05 Bra RS01 RS02 RS06 Bra RS01 RS02 RS07 Bra RS01 RS02 RS08 Bra RS01 RS02 RS09 Bra RS01 RS02 RS10 Bra RS01 RS03 RS04 Bra RS01 RS03 RS05 Bra RS01 RS03 RS06 Bra RS01 RS03 RS07 Bra RS01 RS03 RS08 ################################# part of my popfile my indiv file: Bra U POP1 RS01 U POP2 RS02 U POP3 RS03 U POP4 RS04 U POP5 RS05 U POP6 RS06 U POP7 RS07 U POP8 RS08 U POP9 RS09 U POP10 RS10 U POP11 Thanks! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#61>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEE77B2YK6EMXADBKA2NFGDRHQWKDANCNFSM4LKFGNYQ> .